WGD gene pair methylation level TADs boundary methylation level TADs boundary gene density Gene compartments judgment OE matrix generation Chromosome interaction-distance WGD gene pair contact score Gene pair contact frequency Conservative TADs analysis
TIPS

Function: Calculate the conservative TADs between two species.
Test data: pal_tad10k.txt, peu_tad10k.txt, pal_orth_gene.txt, peu_orth_gene.txt.
Download link of test file: https://github.com/yangxy2/3Dgenome-file/tree/main/web_test_file.
Input data description:
TADs list (species 1/ species 2): The first row is the header, which is " ID Lachesis_group_ID start end"; 4 columns, separated by tab; Each column represents the TADs id, chromosome name, start coordinate, end coordinate;
Orthologous genes (species 1/ species 2): The first row is the header, which is " num Lachesis_group_ID start end "; 4 columns, separated by tab; Each column represents the gene id(the id of orthologous genes between the two species is the same), chromosome name, start coordinate, end coordinate.