WGD gene pair methylation level TADs boundary methylation level TADs boundary gene density Gene compartments judgment OE matrix generation Chromosome interaction-distance WGD gene pair contact score Gene pair contact frequency Conservative TADs analysis
TIPS

Function: Calculate the interaction frequency of different linear distances between gene fragments.
Test data: chr_intra_line_num.txt, chr_intra_matrix.txt, 500000.
Download link of test file: https://github.com/yangxy2/3Dgenome-file/tree/main/web_test_file.
Input data description:
Chromosome interaction line num: The line numbers of intrachromosomal interaction matrix;
Intrachromosomal interaction matrix: No header; 3 columns, separated by tab; From left to right, each column represents bin1 id, bin2 id, interaction frequency;
Resolution: The resolution of interaction matrix(integer).