TADs identification
TIPS:
Function: Identifying TADs.
Test data: pal_100k_mlg01_tad.txt.
Download link of test file: https://github.com/yangxy2/3Dgenome-file/tree/main/web_test_file.
Input data description:
Hi-C contact matrix file: No header; n rows, n+3 columns, separated by tabs, n is the number of bins of the chromosome, the first three columns are bin location information, which are the chromosome name, start coordinate and end coordinate, each row represents the location information of the bin and the interaction frequency with other bins.
Output file description:
bed file: 4 columns; From left to right, each column represents chromosome name, start coordinate, end coordinate, type(‘domain’ represents TADs).
Test data: pal_100k_mlg01_tad.txt.
Download link of test file: https://github.com/yangxy2/3Dgenome-file/tree/main/web_test_file.
Input data description:
Hi-C contact matrix file: No header; n rows, n+3 columns, separated by tabs, n is the number of bins of the chromosome, the first three columns are bin location information, which are the chromosome name, start coordinate and end coordinate, each row represents the location information of the bin and the interaction frequency with other bins.
Output file description:
bed file: 4 columns; From left to right, each column represents chromosome name, start coordinate, end coordinate, type(‘domain’ represents TADs).
