ABRicate

Use Test Data and Preset Parameters
Input file (Fasta, Genbank or EMBL file)
Upload a query fasta/genbank/embl file. (Required)
To screen for antibiotic resistant genes, can be a fasta file, a genbank file or an EMBL file.
Database to use - default is 'resfinder'
Option to switch to other AMR/other database (--db)
Suppress header
Suppress output file's column headings (--noheader)
Minimum DNA %identity(0-100)
(--minid)
Minimum DNA %coverage(0-100)
(--mincov)

Citation(s)