FastTree

Use Test Data and Preset Parameters
Aligned sequences file (FASTA or Phylip format)
FASTA file
Upload a fasta aligned sequences file. (Required)
Allow spaces and other restricted characters (but not ') in sequence and quote names in the output tree.
This tool is only available for fasta input only; FastTree will not be able to read these trees back in. (-quote)
Set starting tree
Protein or nucleotide alignment
Specify if the aligned sequences are nucleotide or protein sequences
Nucleotide evolution model

Citation(s)

  • Price, M. N., Dehal, P. S., & Arkin, A. P. (2010). FastTree 2–approximately maximum-likelihood trees for large alignments. PloS one , 5(3), e9490. PMID:20224823