Shovill

Use Test Data and Preset Parameters
Forward reads (R1)
Upload a fastq file. (Required)
The file of forward reads in FASTQ format
Reverse reads (R2)
Upload a fastq file. (Required)
The file of reverse reads in FASTQ format
Trim reads
Use Trimmomatic to remove common adaptors first (default: OFF) (--trim)
Contig name format
Format of contig FASTA IDs in 'printf' style (default: 'contig%05d') (--namefmt)
Depth
Sub-sample --R1/--R2 to this depth. Disable with --depth 0 (default: 150) (--depth)
Minimum contig length
Minimum length of contig to be output. 0 is AUTO (default: 0) (--minlen)
Minimum contig coverage
Minimum coverage to call part of a contig. 0 is AUTO (default: 2) (--mincov)

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